Compile LAGOSUS data

Source: R/compile.R

Compile LAGOSUS data from component flat files. This function should rarely be called directly outside of manual updating of source data.

lagosus_compile(
  locus_version = NA,
  locus_folder = NA,
  locus_overwrite = FALSE,
  limno_version = NA,
  limno_folder = NA,
  limno_overwrite = FALSE,
  geo_version = NA,
  geo_folder = NA,
  geo_overwrite = FALSE,
  depth_version = NA,
  depth_folder = NA,
  depth_overwrite = FALSE,
  dest_folder = NA
)

Arguments

locus_version

character LAGOSUS database version string
locus_folder

file.path to locus export folder
locus_overwrite

logical overwrite existing data?
limno_version

character LAGOSUS database version string
limno_folder

file.path to limno export folder
limno_overwrite

logical overwrite existing data?
geo_version

character LAGOSUS database version string
geo_folder

file.path to geo export folder
geo_overwrite

logical overwrite existing data?
depth_version

character LAGOSUS database version string
depth_folder

file.path to depth export folder
depth_overwrite

logical overwrite existing data?
dest_folder

file.path recommended to set as the path returned by lagosus_path

Examples

if (FALSE) {
lagosus_compile(
   locus_version = "1.1",
   locus_folder = "~/Downloads/LAGOS-US-LOCUS-EXPORT",
   depth_version = "0",
   depth_folder = "~/Downloads/LAGOS-US-DEPTH-EXPORT",
   dest_folder = lagosus_path())

lagosus_compile(
   geo_version = "1.0",
   geo_folder = "~/Downloads/LAGOSUS_GEO/GEO_EXPORT_BETA_v1",
   dest_folder = lagosus_path(),
   geo_overwrite = TRUE)
}